21. Fan Hong, Jocelyn Y. Kishi, Ryan N. Delgado, Jiyoun Jeong, Sinem K. Saka, Hanquan Su, Constance L. Cepko, Peng Yin. Thermal-plex: Fluidic-free, rapid sequential multiplexed imaging with DNA encoded thermal channels. Nature Methods, 2024, 21, 331–341
20. Lan Liu, Fan Hong, Hao Liu, Xu Zhou, Shuoxing Jiang, Petr Sulc, Jianhui Jiang, Hao Yan. A localized DNA finite-state machine with temporal resolution. Science advances 8.12 (2022): eabm9530.
19. Aidan Tinafar, Yu Zhou, Fan Hong, Kirstie L. Swingle, Anli A. Tang, Alexander A. Green, Keith Pardee. Cell-Free Biosensors: Synthetic Biology Without Borders, Handbook of cell biosensors, Springer, 2022
18. Longlong Si,Haiqing Bai, Crystal Yuri Oh, Tian Zhang, Amanda Jiang, Fan Hong, Yongxin Ye, Tristan X Jordan, James Logue, Marisa McGrath, Chaitra Belgur, Atiq Nurani, Wuji Cao, Rani K Powers, Rachelle Prantil-Baun, Steven P Gygi, Matthew Frieman, Benjamin R tenOever, Donald Elliot Ingber. Self-assembling short immunostimulatory duplex RNAs with broad spectrum antiviral activity Molecular Therapy-Nucleic Acids, 2022, 29: 923-940.
17. Hao Liu, Fan Hong, Francesca Smith, John Geortz, Thomas Ouldrige, Molly M. Stevens, Hao Yan, Petr Sulc, Kinetics of RNA and RNA:DNA Hybrid Strand Displacement , ACS Synthetic Biology, 2021, 10(11): 3066-3073.
16. Shuoxing Jiang, Nibedita Pal, Fan Hong, Nour Eddine Fahmi, Huiyu Hu, Matthew Vrbanac, Hao Yan, Nils G. Walter, Yan Liu, Regulating DNA Self-Assembly Dynamics with Controlled Nucleation, ACS Nano, 2021, 15, 5384-5396
15. Fan Hong, John Shreck, Petr Sulc, Understanding DNA interactions in crowded environments with a coarse-grained model, Nucleic Acid Research, 2020, 48, 10726–10738
13. Fan Hong, Duo Ma, Kaiyue Wu, Lida A. Mina, Rebecca C. Luiten, Yan Liu, Hao Yan*, Alexander A. Green*. Precise and Programmable Detection of Mutations Using Ultraspecific Riboregulators, Cell, 2020, 180(5): 1018-1032 (Featured as the cover article)
Highlighted by Nature Methods: Pinpointing RNA mutations.
See media coverage: TechnologyNetworks, ScienceDaily, Phys.org, Science Codex, EurekAlert, GENnews, GenomeWeb, featured in Coriell Institute.
See media coverage: TechnologyNetworks, ScienceDaily, Phys.org, Science Codex, EurekAlert, GENnews, GenomeWeb, featured in Coriell Institute.
12. Fan Hong, Petr Sulc. An emergent understanding of strand displacement in RNA biology, Journal of Structural Biology, 2019, 207(3): 241-249.
11. Fan Hong, Shuoxing Jiang, Xiang Lan, Raghu Pradeep Narayanan, Petr, Sulc, Fei Zhang, Yan Liu, Hao Yan, Layered-Crossover Tiles with Precisely Tunable Angles for 2D and 3D DNA Crystal Engineering, J. Am. Chem. Soc. 2018, 140, 14670-14676.
10. Shuoxing Jiang #, Fan Hong#, Huiyu Hu, Hao Yan, Yan Liu, Understanding the Elementary steps in DNA tile-based self-assembly. ACS nano, 2017, 11, 9, 9370-9381. #Contributed Equally.
9. Fan Hong, Fei Zhang, Yan Liu, Hao Yan, DNA origami: scaffolds for creating high order structures. Chemical Review, 2017, 117, 20, 12584-12640
8. F. Zhang, F. Hong, H. Yan*, DNA Origami Tiles: Nanoscale Mazes, Nat. Nanotechnol., 2017, 12, 189-190.
7. Fan Hong, Shuoxing Jiang, Tong Wang, Yan Liu, Hao Yan, 3D Framework DNA origami structure with layered crossover motifs. Angew Chem Int Ed, 2016,55,41, 12832-12835.
As an undergraduate researcher:
6. Xiaowen Ou, Fan Hong, Zhenyu Zhang, Yong Chen, Zujin Zhao, Pengcheng Gao, Xiaoding Lou, Fan Xia*, Shutao Wang, A highly sensitive and facile graphene oxide-based nucleic acid probe: Label-free detection of telomerase activity in cancer patient's urine using AIEgens, Biosensors and Bioelectronics, 2016, 89, 417-421.
5. Wei Guo #, Fan Hong#, Nannan Liu#, Jiayu Huang, Boya Wang, Ruixue Duan, Xiaoding Lou, Fan Xia*. Target-Specific 3D DNA Gatekeepers for Biomimetic Nanopores, Advanced Materials, 2015, 27(12): 2090-2095. # Co-first author, Contributed Equally.
4. Ruixue Duan, Boya Wang, Fan Hong, Tianchi Zhang, Yongmei Jia, Jiayu Huang, Abdul Hakeem, Nannan Liu, Xiaoding Lou, Fan Xia*, Real-time monitoring of enzyme-free strand displacement cascades by colorimetric assays. Nanoscale, 2015,7, 5719-5725.
3. Di Kang, Ruixue Duan, Yerpeng Tan, Fan Hong, Boya Wang, Zhifei Chen, Shaofang Xu, Xiaoding Lou, Wei Wei, Bernard Yurke, Fan Xia*, Speeding up the self-assembly of DNA nanodevice by variety of polar solvents. Nanoscale, 2014, 6, 14153-14157.
2. Abdul Hakeem, Ruixue Duan, Boya Wang, Fan Hong, et al, Dual Stimuli-Responsive Nano-Vehicle for Controlled Drug Delivery: Mesoporous Silica Nanoparticles End-Capped with Natural Chitosan, Chemical Communications, 2014,50, 13268-13271
1. Yongmei Jia, Ruixue Duan, Fan Hong, Fan Xia*. Electrochemical Biocomputing: A New Class of Molecular-Electronic Logic Devices. Soft Matter, 2013, 9, 6571-6577