1. SNIPR
SNIPR is a software to design single nucleotide specific programmable riboregulators that can be applied for precise gene regulation and molecular diagnostics.
2. CrowderOxDNA and CrowderDNAViewer
Crowder-oxDNA is a software package to study DNA interactions under crowded environment with molecular dynamics. CrowdeDNA Viewer is a web-based software used to visualize oxDNA simulation with crowding particles.